PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G2016
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 416aa    MW: 47316.8 Da    PI: 6.1066
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G2016genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.72.4e-2187181183
     trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                  +Wt ++v++Li++ ++++e+ ++++           +k ++W+ vsk+m erg+ +sp+qC++k++nlnk y+++++  +++ +++++++ +++d
  Gh_D04G2016  87 KWTGKMVKLLITILSYIGEDPSTDCagnqikvssllRKLGKWKCVSKVMLERGYIVSPQQCEDKFNNLNKTYRRLNDLLGRGtSCKVVENPKLLD 181
                  7**********************988899999999999*******************************************95588887776665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-1885209No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MEGKPSAGGN MLQEWEYDCL GLQGSIQPQN EQQPCMSRLP SAFGSVENER QEIIVIEDDV  60
TNYPNQCMLE HNEAGKNEDG SPWQRMKWTG KMVKLLITIL SYIGEDPSTD CAGNQIKVSS  120
LLRKLGKWKC VSKVMLERGY IVSPQQCEDK FNNLNKTYRR LNDLLGRGTS CKVVENPKLL  180
DIINVSEKGK EDVRKLLMSK HLFFEEMCSY HNGNRLYLPH DPDLLQSLLF ILKNVDDYEL  240
LDSNQPVPDK KAGVTAKDNE DFAEFSAKWL ELISENGIAP SGSNQTLNAE GDATEYNGAN  300
SGFSAEISTM WFKPMNNNEV VGPTSSLKPS CFNQIPDTED NEADGSQWMT RRAYQLEKQK  360
LRLKSKVLDL EKQRLKWRCR SWKQDMELEK MRLVNKCLKH GNECIALQLK GKKIGS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458111.10.0PREDICTED: uncharacterized protein LOC105778907
TrEMBLA0A0D2S3V80.0A0A0D2S3V8_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2214945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.12e-75